GgaEX6015183 @ galGal3
Exon Skipping
Gene
ENSGALG00000004088 | FNBP1
Description
NA
Coordinates
chr17:6296954-6300177:-
Coord C1 exon
chr17:6300068-6300177
Coord A exon
chr17:6297918-6298050
Coord C2 exon
chr17:6296954-6297075
Length
133 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCTTCTGTCCCTCAGAGA
3' ss Score
9.81
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
GGAGCAGGGCCAGAGGACTTCAGCAATCTCCCACCTGAACAAAGAAGAAAGAAACTTCAGCAAAAAGTGGATGAGCTCAACAAAGACATTCAGAAGGAGATGGATCAAAG
Seq A exon
AGATGCCTTAACAAAGATGAAAGATGTGTATATCAAGAACCCACAGATGGGAGACGCAGCGAGTGTGGACCACAGATTATCAGAACTTGAACAGAACATTGAAAAGCTACGATTAGAAGTGCAGAAATTTGAG
Seq C2 exon
GGCTGGCTGGCCGACGTGGAGGGCAGGTTGCCCGCACGGACTGAGCAGGCCCGGCGGCAGAGTGGGCTGTATGAAGCCCAGAACACATCAGCAGTGAACAGCTGTGCACAGGACCGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004088-'20-24,'20-23,21-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.622 C2=0.780
Domain overlap (PFAM):
C1:
PF122293=PG_binding_4=FE(36.4=100),PF143891=Lzipper-MIP1=PU(34.5=78.4),PF154561=Uds1=PU(36.4=86.5),PF0218511=HR1=PU(25.8=43.2)
A:
PF122293=PG_binding_4=PD(41.4=91.1),PF143891=Lzipper-MIP1=FE(52.4=100),PF154561=Uds1=FE(50.0=100),PF0218511=HR1=FE(71.0=100)
C2:
PF143891=Lzipper-MIP1=PD(10.7=22.0),PF154561=Uds1=PD(11.4=24.4),PF0218511=HR1=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCAGAGGACTTCAGCAAT
R:
CTCTCCCGGTCCTGTGCA
Band lengths:
226-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]