BtaEX6046673 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020313 | FNBP1
Description
Bos taurus formin binding protein 1 (FNBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206712]
Coordinates
chr11:100295907-100303833:-
Coord C1 exon
chr11:100303724-100303833
Coord A exon
chr11:100298314-100298446
Coord C2 exon
chr11:100295907-100296028
Length
133 bp
Sequences
Splice sites
3' ss Seq
CTGCCCCTTCTCTTTTTCAGAGA
3' ss Score
11.73
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GGCGCGACACCAGAAGATTTCAGCAACCTCCCACCCGAACAGAGAAGGAAAAAGCTCCAGCAGAAAGTCGATGAATTAAATAAAGAAATCCAAAAGGAAATGGATCAAAG
Seq A exon
AGACGCCATCACAAAAATGAAAGATGTCTACCTAAAGAATCCGCAAATGGGAGACCCCACCAGTTTGGATCACAAATTAGCGGAAGTCAGCCAAAATATAGACAAACTGAGACTAGAGACCCAGAAATTCGAG
Seq C2 exon
GCCTGGCTGGCCGAGGTGGAAGGCCGACTCCCAGCCCGCAGCGACCAGGCCCGTCGGCAGAGTGGGATGTACGAGGCGCAGAACGCCCCCTCCGTCAACAACTGCGCGCAGGATCGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020313-'19-23,'19-22,20-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.928 A=0.644 C2=0.797
Domain overlap (PFAM):
C1:
PF154561=Uds1=PU(37.5=89.2),PF0218511=HR1=PU(24.2=43.2)
A:
PF154561=Uds1=FE(50.0=100),PF0218511=HR1=FE(66.7=100)
C2:
PF154561=Uds1=PD(10.2=22.0),PF0218511=HR1=PD(6.1=9.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCGACACCAGAAGATTTCA
R:
CTCTCCCGATCCTGCGCG
Band lengths:
231-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]