HsaEX0026110 @ hg38
Exon Skipping
Gene
ENSG00000187239 | FNBP1
Description
formin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17069]
Coordinates
chr9:129900426-129908999:-
Coord C1 exon
chr9:129908890-129908999
Coord A exon
chr9:129902869-129903001
Coord C2 exon
chr9:129900426-129900547
Length
133 bp
Sequences
Splice sites
3' ss Seq
CTACTCGTTCTTTCTTTCAGAGA
3' ss Score
10.85
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGTGCAACACCGGAGGATTTCAGCAACCTCCCACCTGAACAAAGAAGGAAAAAGCTGCAGCAGAAAGTCGATGAGTTAAATAAAGAAATTCAGAAGGAGATGGATCAAAG
Seq A exon
AGATGCCATAACAAAAATGAAAGATGTCTACCTAAAGAATCCTCAGATGGGAGACCCAGCCAGTTTGGATCACAAATTAGCAGAAGTCAGCCAAAATATAGAGAAACTGCGAGTAGAGACCCAGAAATTTGAG
Seq C2 exon
GCCTGGCTGGCTGAGGTTGAAGGCCGGCTCCCAGCACGCAGCGAGCAGGCGCGCCGGCAGAGCGGACTGTACGACAGCCAGAACCCACCCACAGTCAACAACTGCGCCCAGGACCGTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187239_MULTIEX1-8/10=7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=0.747 C2=0.806
Domain overlap (PFAM):
C1:
PF154561=Uds1=PU(37.1=89.2),PF0218511=HR1=PU(25.4=43.2)
A:
PF154561=Uds1=FE(49.4=100),PF0218511=HR1=FE(69.8=100)
C2:
PF154561=Uds1=PD(11.2=24.4),PF0218511=HR1=PD(1.6=2.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGATTTCAGCAACCTCC
R:
CTCTCACGGTCCTGGGCG
Band lengths:
222-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development