DreEX6083062 @ danRer10
Exon Skipping
Gene
ENSDARG00000101028 | fnbp1b
Description
formin binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-091117-6]
Coordinates
chr21:6268350-6270324:+
Coord C1 exon
chr21:6268350-6268459
Coord A exon
chr21:6269976-6270108
Coord C2 exon
chr21:6270197-6270324
Length
133 bp
Sequences
Splice sites
3' ss Seq
CCCTTTTTTTCTCTCTGCAGAGA
3' ss Score
12.85
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
GGTTCCAATCCTGAGGACTTCAGTCATCTTCCTCCAGAGCAGAGACGGAAGAAGCTGCAGGCCAAGATTGACGACATCAATAAAGACATACAGAAAGAGATGGATCAGAG
Seq A exon
AGATGCTTTGACTAAAATGAAAGAGGTATATATAAAGAACCCACAGATGGGGGATCCCAACAGTGTGGACCCACGGTTAGCAGAGATCGCCCACAACATTGAGAAACTGCAGGTGGAGGCACAGAAATTTGAG
Seq C2 exon
GGCTGGTTAGCAGAGGTCGAAGGAAGGATGCCGGTAAAGAGTGACACTTCACGGAGGACGAGCACCGTATACGAGACCCAAAACAGCACACCACCCACCAACAACAACTGCGCACAGGATAGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101028-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.996 A=0.813 C2=0.973
Domain overlap (PFAM):
C1:
PF154561=Uds1=PU(37.5=89.2),PF0218511=HR1=PU(23.2=43.2)
A:
PF154561=Uds1=FE(50.0=100),PF0218511=HR1=FE(63.8=100)
C2:
PF154561=Uds1=PD(10.2=20.9),PF0218511=HR1=PD(10.1=16.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCCAATCCTGAGGACTTCA
R:
TCTCTCTATCCTGTGCGCAGT
Band lengths:
237-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]