HsaEX0026110 @ hg19

Exon Skipping

Gene

ENSG00000187239 | FNBP1

Description

formin binding protein 1 [Source:HGNC Symbol;Acc:17069]

Coordinates

chr9:132662705-132671278:-

Coord C1 exon

chr9:132671169-132671278

Coord A exon

chr9:132665148-132665280

Coord C2 exon

chr9:132662705-132662826

Length

133 bp

Sequences

Splice sites

3' ss Seq

CTACTCGTTCTTTCTTTCAGAGA

3' ss Score

10.85

5' ss Seq

GAGGTATGA

5' ss Score

8.55

Exon sequences

Seq C1 exon

GGTGCAACACCGGAGGATTTCAGCAACCTCCCACCTGAACAAAGAAGGAAAAAGCTGCAGCAGAAAGTCGATGAGTTAAATAAAGAAATTCAGAAGGAGATGGATCAAAG

Seq A exon

AGATGCCATAACAAAAATGAAAGATGTCTACCTAAAGAATCCTCAGATGGGAGACCCAGCCAGTTTGGATCACAAATTAGCAGAAGTCAGCCAAAATATAGAGAAACTGCGAGTAGAGACCCAGAAATTTGAG

Seq C2 exon

GCCTGGCTGGCTGAGGTTGAAGGCCGGCTCCCAGCACGCAGCGAGCAGGCGCGCCGGCAGAGCGGACTGTACGACAGCCAGAACCCACCCACAGTCAACAACTGCGCCCAGGACCGTGAGAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000187239-'23-31,'23-30,25-31

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.979 A=0.731 C2=0.809

Domain overlap (PFAM):

C1:

PF039618=DUF342=FE(28.8=100),PF136541=AAA_32=FE(24.0=100),PF143891=Lzipper-MIP1=PU(34.9=78.4),PF0396210=Mnd1=PU(28.1=73.0),PF154561=Uds1=PU(37.8=91.9),PF0043516=Spectrin=PU(32.1=70.3),PF0218511=HR1=PU(31.5=62.2)

A:

PF039618=DUF342=FE(35.2=100),PF136541=AAA_32=FE(29.3=100),PF143891=Lzipper-MIP1=FE(53.0=100),PF0396210=Mnd1=FE(45.8=100),PF154561=Uds1=FE(48.9=100),PF0043516=Spectrin=FE(54.3=100),PF0218511=HR1=FE(60.3=100)

C2:

PF039618=DUF342=PD(22.4=68.3),PF136541=AAA_32=FE(26.7=100),PF143891=Lzipper-MIP1=PD(9.6=19.5),PF0396210=Mnd1=PD(24.0=56.1),PF154561=Uds1=PD(11.1=24.4),PF0043516=Spectrin=PD(11.1=22.0),PF0218511=HR1=PD(5.5=9.8)

Main Inclusion Isoform:

ENSP00000413625