RnoEX0036512 @ rn6
Exon Skipping
Gene
ENSRNOG00000008258 | Fnbp1
Description
formin binding protein 1 [Source:RGD Symbol;Acc:621350]
Coordinates
chr3:9868710-9873485:-
Coord C1 exon
chr3:9873376-9873485
Coord A exon
chr3:9869345-9869477
Coord C2 exon
chr3:9868710-9868831
Length
133 bp
Sequences
Splice sites
3' ss Seq
TCTTGTTACCCCTTTCTCAGAGA
3' ss Score
7.47
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
Exon sequences
Seq C1 exon
GGTGTCACCCCGGAAGACTTCAGCAACTTCCCGCCTGAGCAGAGAAGGAAAAAACTACAACAGAAAGTGGACGATCTCAATAAAGAGATCCAAAAGGAGACCGACCAGAG
Seq A exon
AGACGCCATCACTAAAATGAAAGATGTGTACCTAAAGAACCCTCAGATGGGAGACCCGGCCAGCTTGGACCACAAACTCGCCGAAGTCACCCAGAACATAGAAAAACTGCGGCTGGAGGCTCACAAGTTCGAG
Seq C2 exon
GCCTGGCTGGCTGAGGTGGAAGGCAGACTCCCAGCTCGGAGTGAGCAGGCACGCCGGCAAAGTGGGCTGTACGACGGCCAGACACACCAGACGGTCACTAACTGCGCCCAGGACCGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008258-'25-23,'25-21,28-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.930 A=0.667 C2=0.776
Domain overlap (PFAM):
C1:
PF143891=Lzipper-MIP1=PU(33.7=73.7),PF154561=Uds1=PU(30.4=63.2),PF0218511=HR1=PU(25.8=42.1)
A:
PF143891=Lzipper-MIP1=FE(53.0=100),PF154561=Uds1=FE(55.7=100),PF0218511=HR1=FE(71.0=100)
C2:
PF143891=Lzipper-MIP1=PD(12.0=23.8),PF154561=Uds1=PD(12.7=23.8),PF0218511=HR1=PD(1.6=2.4)
Main Skipping Isoform:
ENSRNOT00000042798fB5642
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTCACCCCGGAAGACTTC
R:
CGGTCCTGGGCGCAGTTA
Band lengths:
226-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]