GgaEX1025316 @ galGal4
Exon Skipping
Gene
ENSGALG00000005850 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr8:12816878-12817979:-
Coord C1 exon
chr8:12817870-12817979
Coord A exon
chr8:12817455-12817587
Coord C2 exon
chr8:12816878-12816972
Length
133 bp
Sequences
Splice sites
3' ss Seq
GGGGTTTTCTATGTTGTTAGAGA
3' ss Score
2.99
5' ss Seq
GAGGTTAGA
5' ss Score
4.15
Exon sequences
Seq C1 exon
GGCCCTGCACTGGAAGACTTCAGCCACCTTCCTCCAGAACAAAGACGCAAGAAACTTCAGCAGAGAATTGATGAACTCAACAGAGAACTACAGAAGGAAACTGACCAAAA
Seq A exon
AGATGCCCTCATCAAGATGAGAGATGTTTATGAAAAAAATCCCCAGATGGGTGATCCAAGCAGTTTACAGCCAAAATTAGCTGAGACAATGAGCAACATGGACCGTCTTCGGATGGAAATACACAAGAATGAG
Seq C2 exon
GCCTGGCTCTCTGAAGTTGAAGGAAAAGTAGCAGCCAGAACTGACAGGCGACACAGCAGTGATATCAACCACCTTGTAACACAGGGCAGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005850-'27-29,'27-27,28-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.946 A=0.956 C2=0.875
Domain overlap (PFAM):
C1:
PF103924=COG5=PU(35.9=89.2),PF154561=Uds1=PU(35.2=86.5),PF143891=Lzipper-MIP1=PU(33.3=78.4),PF0218511=HR1=PU(25.8=43.2)
A:
PF103924=COG5=FE(47.8=100),PF154561=Uds1=FE(48.4=100),PF143891=Lzipper-MIP1=FE(50.6=100),PF0218511=HR1=FE(71.0=100)
C2:
PF103924=COG5=PD(14.1=40.6),PF154561=Uds1=PD(14.3=40.6),PF143891=Lzipper-MIP1=PD(13.8=37.5),PF0218511=HR1=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCACTGGAAGACTTCAGC
R:
CTCTCTCTGCCCTGTGTTACA
Band lengths:
202-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]