HsaEX6032162 @ hg38
Exon Skipping
Gene
ENSG00000137942 | FNBP1L
Description
formin binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr1:93544107-93547441:+
Coord C1 exon
chr1:93544107-93544216
Coord A exon
chr1:93546842-93546974
Coord C2 exon
chr1:93547347-93547441
Length
133 bp
Sequences
Splice sites
3' ss Seq
GGGTTCCTTCTCTTTTTTAGAGA
3' ss Score
9.05
5' ss Seq
GAGGTAGAT
5' ss Score
6.04
Exon sequences
Seq C1 exon
GGCCCAGCACTAGAAGATTTCAGTCATCTGCCACCAGAACAGAGACGTAAAAAACTACAGCAGCGCATTGATGAACTTAACAGAGAACTACAGAAAGAATCAGACCAAAA
Seq A exon
AGATGCACTCAACAAAATGAAAGATGTATATGAGAAGAATCCACAAATGGGGGATCCAGGGAGTTTGCAGCCTAAATTAGCAGAGACCATGAATAACATTGACCGCCTACGAATGGAAATCCATAAGAATGAG
Seq C2 exon
GCTTGGCTCTCTGAAGTCGAAGGCAAAACAGGTGGGAGAGGAGACAGAAGACATAGCAGTGACATAAATCATCTTGTAACACAGGGACGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137942-'32-37,'32-34,35-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=0.922 C2=1.000
Domain overlap (PFAM):
C1:
PF154561=Uds1=PU(36.8=86.5),PF143891=Lzipper-MIP1=PU(34.1=78.4),PF0218511=HR1=PU(25.0=43.2)
A:
PF154561=Uds1=FE(50.6=100),PF143891=Lzipper-MIP1=FE(51.8=100),PF0218511=HR1=FE(68.8=100)
C2:
PF154561=Uds1=PD(10.3=28.1),PF143891=Lzipper-MIP1=PD(11.8=31.2),PF0218511=HR1=PD(3.1=6.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCAGCACTAGAAGATTTCA
R:
TCTCGTCCCTGTGTTACAAGA
Band lengths:
202-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains