DreEX6048928 @ danRer10
Exon Skipping
Gene
ENSDARG00000020131 | fnbp1l
Description
formin binding protein 1-like [Source:ZFIN;Acc:ZDB-GENE-040801-155]
Coordinates
chr8:15032476-15034617:+
Coord C1 exon
chr8:15032476-15032585
Coord A exon
chr8:15033465-15033597
Coord C2 exon
chr8:15034523-15034617
Length
133 bp
Sequences
Splice sites
3' ss Seq
TCCATTTGTCTTTATTCCAGAGA
3' ss Score
7.81
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
GCGCCAACACTAGAGGATCTCAGCCACCTTCCCCCTGAACAGAGACGCAAAAAACTACAACAGCGGATCGATGAGCTGAATAAAGAACTGCAGAAGGAACAGGACCAAAG
Seq A exon
AGATGCTCTCAACAAAATGAAAGATGTCTATGAGAAGAATCCCCAGATGGGAGATCCTGGAAGTCTCCAGCCCAAGATATCAGAGACCATATGCAACATGGAGAAACTCCGCTCCGAGATCCATAAAAATGAG
Seq C2 exon
AGCTGGTTAGCAGAGGTGGAAGGAAAGCATGGATCTCGAAGTGAGCGGCGGTCCAGTGCAGATGTAAACCATCACGCTCCGCACGGAAGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020131-'18-16,'18-15,19-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.959 A=0.878 C2=1.000
Domain overlap (PFAM):
C1:
PF039618=DUF342=FE(30.8=100),PF143891=Lzipper-MIP1=PU(34.5=78.4),PF0218511=HR1=PU(25.0=43.2)
A:
PF039618=DUF342=FE(37.6=100),PF143891=Lzipper-MIP1=FE(52.4=100),PF0218511=HR1=FE(68.8=100)
C2:
PF039618=DUF342=PD(25.6=93.8),PF143891=Lzipper-MIP1=PD(10.7=28.1),PF0218511=HR1=PD(3.1=6.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCCAACACTAGAGGATCTC
R:
CTCTCTCTTCCGTGCGGAG
Band lengths:
205-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]