MmuEX6073852 @ mm9
Exon Skipping
Gene
ENSMUSG00000039735 | Fnbp1l
Description
formin binding protein 1-like [Source:MGI Symbol;Acc:MGI:1925642]
Coordinates
chr3:122249218-122252183:-
Coord C1 exon
chr3:122252074-122252183
Coord A exon
chr3:122249861-122249993
Coord C2 exon
chr3:122249218-122249312
Length
133 bp
Sequences
Splice sites
3' ss Seq
GGTTTCCTTTTGTTTCTCAGAGA
3' ss Score
8.29
5' ss Seq
GAGGTACAT
5' ss Score
6.75
Exon sequences
Seq C1 exon
GGCCCAGCACTAGAAGATTTCAGTCATTTGCCACCAGAGCAGAGGCGGAAGAAGTTACAGCAGCGCATTGACGAGCTTAACCGAGGGCTGCAGAAGGAAGCAGACCAAAA
Seq A exon
AGAAGCACTCAACAAAATGAAGGATGTGTATGAGAAAAATCCACAGATGGGGGATCCAGGAAGTCTGCAGCCTAAATTAGCAGAGACCATGAATAACATTGACCGCTTACGAATGGAAATCCACAAGAATGAG
Seq C2 exon
GCATGGCTCTCTGAAGTTGAAGGCAAAACAGGTATAAGAGGTGACAGAAGACACAGCAGTGACATAAATCATCTTGTGACACAGGGACGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039735-'20-21,'20-20,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.939 A=0.900 C2=0.969
Domain overlap (PFAM):
C1:
PF143891=Lzipper-MIP1=PU(34.1=78.4),PF154561=Uds1=PU(36.8=86.5),PF0218511=HR1=PU(25.0=43.2)
A:
PF143891=Lzipper-MIP1=FE(51.8=100),PF154561=Uds1=FE(50.6=100),PF0218511=HR1=FE(68.8=100)
C2:
PF143891=Lzipper-MIP1=PD(11.8=31.2),PF154561=Uds1=PD(10.3=28.1),PF0218511=HR1=PD(3.1=6.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCAGCACTAGAAGATTTCA
R:
TCTCGTCCCTGTGTCACAAGA
Band lengths:
202-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: