RnoEX6011381 @ rn6
Exon Skipping
Gene
ENSRNOG00000013798 | Fnbp1l
Description
formin binding protein 1-like [Source:RGD Symbol;Acc:1305386]
Coordinates
chr2:226696106-226699025:-
Coord C1 exon
chr2:226698916-226699025
Coord A exon
chr2:226696672-226696804
Coord C2 exon
chr2:226696106-226696200
Length
133 bp
Sequences
Splice sites
3' ss Seq
GGTTTCTTTTTGTTTCTCAGAGA
3' ss Score
8.64
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GGCCCAGCACTAGAAGATTTCAGTCATTTGCCACCAGAGCAGAGGCGTAAGAAGTTACAGCAACGGATTGATGAGCTTAACCGAGGGCTGCAGAAAGAATCAGACCAAAA
Seq A exon
AGAAGCACTCAACAAAATGAAAGATGTATATGAGAAAAATCCACAAATGGGGGATCCAGGAAGTCTGCAGCCTAAATTAGCAGAGACCATGAATAACATTGACCGCTTACGAATGGAAATCCACAAGAATGAG
Seq C2 exon
GCATGGCTCTCTGAAGTGGAAGGCAAAACAGGTGTGAGAGGAGACAGAAGACACAGCAGTGACATAAACCATCTCGTGACACAGGGGCGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013798-'21-20,'21-18,22-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.955 A=0.911 C2=0.969
Domain overlap (PFAM):
C1:
PF143891=Lzipper-MIP1=PU(34.1=78.4),PF0218511=HR1=PU(25.0=43.2)
A:
PF143891=Lzipper-MIP1=FE(51.8=100),PF0218511=HR1=FE(68.8=100)
C2:
PF143891=Lzipper-MIP1=PD(11.8=31.2),PF0218511=HR1=PD(3.1=6.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCAGCACTAGAAGATTTCA
R:
CTTTCTCGCCCCTGTGTCAC
Band lengths:
205-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]