BtaEX6016553 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004383 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr3:50095509-50097626:-
Coord C1 exon
chr3:50097517-50097626
Coord A exon
chr3:50095996-50096128
Coord C2 exon
chr3:50095509-50095603
Length
133 bp
Sequences
Splice sites
3' ss Seq
GGCTTCCTTCTCATTTTCAGAGA
3' ss Score
9.22
5' ss Seq
GAGGTAGAT
5' ss Score
6.04
Exon sequences
Seq C1 exon
GGCCCAGCACTAGAAGATTTCAGTCATCTGCCACCAGAACAGAGACGTAAAAAACTGCAGCAGCGCATTGATGAACTTAACAGAGAACTACAGAAAGAATCAGATCAAAA
Seq A exon
AGAAGCACTCAACAAAATGAAAGATGTATATGAGAAGAATCCACAAATGGGGGACCCAGGGAGTTTGCAGCCTAAATTAGCAGAGACCATGAATAATATTGACCGCCTGCGAATGGAAATCCACAAGAATGAG
Seq C2 exon
GCTTGGCTCTCTGAAGTTGAAGGCAAAACAGGTGGAAGAGGAGACAGAAGACATAGCAGTGACATAAATCATCTTGTAACACAGGGACGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004383-'17-25,'17-23,18-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.973 A=0.941 C2=1.000
Domain overlap (PFAM):
C1:
PF103924=COG5=FE(36.4=100),PF127872=EcsC=FE(32.1=100),PF143891=Lzipper-MIP1=PU(34.1=78.4),PF0218511=HR1=PU(25.0=43.2)
A:
PF103924=COG5=FE(44.4=100),PF127872=EcsC=FE(39.3=100),PF143891=Lzipper-MIP1=FE(51.8=100),PF0218511=HR1=FE(68.8=100)
C2:
PF103924=COG5=PD(9.1=28.1),PF127872=EcsC=PD(23.2=81.2),PF143891=Lzipper-MIP1=PD(11.8=31.2),PF0218511=HR1=PD(3.1=6.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCAGCACTAGAAGATTTCA
R:
TCTCGTCCCTGTGTTACAAGA
Band lengths:
202-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]