BtaEX6038679 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017280 | C3
Description
Bos taurus complement component 3 (C3), mRNA. [Source:RefSeq mRNA;Acc:NM_001040469]
Coordinates
chr7:18995420-18997025:+
Coord C1 exon
chr7:18995420-18995566
Coord A exon
chr7:18996474-18996683
Coord C2 exon
chr7:18996819-18997025
Length
210 bp
Sequences
Splice sites
3' ss Seq
ATCCATCTTTCCCTGACCAGGTA
3' ss Score
9.05
5' ss Seq
ATGGTCCGT
5' ss Score
3.18
Exon sequences
Seq C1 exon
GTGTACGTGACAAACCCCGACGGCTCCCCCGCTCGCCACATCCCGGTGGTGACCCAGGGCAGCAATGTGCAGTCCTTGACCCAGGATGATGGCGTGGCCAAGCTAAGCATCAACACACAGAACAAACGGGATCCCCTGACCATCACC
Seq A exon
GTACGCACAAAAAAGGACAATATCCCCGAGGGGCGACAGGCCACCAGGACCATGCAGGCCCTACCCTACAACACCCAGGGGAACTCCAATAACTACCTGCACCTCTCTGTGCCCCGCGTGGAGCTCAAGCCTGGGGAGACTCTCAACGTCAACTTCCACCTGCGCACGGACCCCGGCGAGCAAGCCAAGATCCGCTACTACACCTACATG
Seq C2 exon
ATCATGAACAAGGGGAAGCTGTTGAAGGTGGGACGCCAGTACCGAGAGCCCGGCCAGGACCTAGTGGTGTTGCCCTTGACCATCACGTCAGACTTCATCCCTTCCTTCCGCCTGGTGGCCTATTACACACTGATTAATGCCAAAGGCCAGAGGGAGGTGGTGGCCGACTCCGTGTGGGTGGATGTCAAGGACTCGTGTATGGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017280-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.673 A=0.443 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077039=A2M_N_2=PU(24.7=52.9)
C2:
PF077039=A2M_N_2=FE(45.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGTGCAGTCCTTGACCC
R:
GTGCCCATACACGAGTCCTTG
Band lengths:
292-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]