MmuEX6078723 @ mm9
Exon Skipping
Gene
ENSMUSG00000024164 | C3
Description
complement component 3 [Source:MGI Symbol;Acc:MGI:88227]
Coordinates
chr17:57362212-57363400:-
Coord C1 exon
chr17:57363254-57363400
Coord A exon
chr17:57362544-57362753
Coord C2 exon
chr17:57362212-57362418
Length
210 bp
Sequences
Splice sites
3' ss Seq
TCTCTGGATTCCTCACCTAGGTC
3' ss Score
7.47
5' ss Seq
CTGGTCCGT
5' ss Score
3.26
Exon sequences
Seq C1 exon
GTGTTCGTGACCAACCCCGATGGCTCTCCGGCCAGCAAAGTGCTGGTGGTCACTCAGGGATCTAATGCAAAGGCTCTCACCCAAGATGATGGCGTGGCCAAGCTAAGCATCAACACACCCAACAGCCGCCAACCCCTGACCATCACA
Seq A exon
GTCCGCACCAAGAAGGACACTCTCCCAGAATCACGGCAGGCCACCAAGACAATGGAGGCCCATCCCTACAGCACTATGCACAACTCCAACAACTACCTACACTTGTCAGTGTCACGAATGGAGCTCAAGCCGGGGGACAACCTCAATGTCAACTTCCACCTGCGCACAGACCCAGGCCATGAGGCCAAGATCCGATACTACACCTACCTG
Seq C2 exon
GTTATGAACAAGGGGAAGCTCCTGAAGGCAGGCCGCCAGGTTCGGGAGCCTGGCCAGGACCTGGTGGTCTTGTCCCTGCCCATCACTCCAGAGTTTATTCCTTCATTTCGCCTGGTGGCTTACTACACCCTGATTGGAGCTAGTGGCCAGAGGGAGGTGGTGGCTGACTCTGTGTGGGTGGATGTGAAGGATTCCTGTATTGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024164-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.449 A=0.471 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077039=A2M_N_2=PU(24.8=52.9)
C2:
PF077039=A2M_N_2=PU(21.8=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGGTCACTCAGGGATCT
R:
TCACATCCACCCACACAGAGT
Band lengths:
292-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: