DreEX6034032 @ danRer10
Exon Skipping
Gene
ENSDARG00000093198 | C3 (8 of 8)
Description
complement component 3 [Source:HGNC Symbol;Acc:HGNC:1318]
Coordinates
chr1:55348820-55349769:-
Coord C1 exon
chr1:55349623-55349769
Coord A exon
chr1:55349334-55349537
Coord C2 exon
chr1:55348820-55349011
Length
204 bp
Sequences
Splice sites
3' ss Seq
TCCCATTTGATTGTTTCCAGGCG
3' ss Score
8.29
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GTCTACGTAACAAACCCTGATGAGACGCCTGCTAAAAATGTGAAAGTGGAGGTCAATCCCGGAGGAGTCAGTGGTCAAACAAAAGCCAACGGCATTGCGAAAGTGACCATCAACACTCCAGGAGGATCTTCTACCTTGGAGATCACT
Seq A exon
GCGAGGACCAGCGATCCGCAATTGACCAGCAGACAGCAAGCAGAGAAGAAGATGACGGCTCATGCTTACGTTCCCAAAGGCGGTTCCAGAAACTACCTGCACATCGGCATTGATGCTGCGGAGCTTAGGATTGGAGACTCGATGAAAGTCAATCTGAACCTGGGACAAAGTCCAGGAGTCAGAGATCAAGATTTCACCTACATG
Seq C2 exon
ATTTTGAGTAGAGGTCAGATTGTGCAAGCAAACAGATTTAAGCGGAGAGGACAAACTCTGGTGTCTCTGTCTCTACCTGTGACCAAAGACATGGTGCCGTCCTTCCGCTTTGTGGCTTATTACCATGTGGGCTCATCTGAGGTGGTGTCTGATTCAGTTTGGGTCGATGTGAAGGACACCTGCATGGGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093198-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.653 A=0.368 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077039=A2M_N_2=PU(24.6=51.5)
C2:
PF077039=A2M_N_2=FE(44.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTGGAGGTCAATCCCGGA
R:
GATCCCATGCAGGTGTCCTTC
Band lengths:
296-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]