MmuEX6078723 @ mm10
Exon Skipping
Gene
ENSMUSG00000024164 | C3
Description
complement component 3 [Source:MGI Symbol;Acc:MGI:88227]
Coordinates
chr17:57209589-57226882:-
Coord C1 exon
chr17:57226693-57226882
Coord A exon
chr17:57223121-57223330
Coord C2 exon
chr17:57209589-57209648
Length
210 bp
Sequences
Splice sites
3' ss Seq
TCTCTGGATTCCTCACCTAGGTC
3' ss Score
7.47
5' ss Seq
CTGGTCCGT
5' ss Score
3.26
Exon sequences
Seq C1 exon
GTATTCCATCATTACTCCCAATGTCCTACGGCTGGAGAGCGAAGAGACCATCGTACTGGAGGCCCACGATGCTCAGGGTGACATCCCAGTCACAGTCACTGTGCAAGACTTCCTAAAGAGGCAAGTGCTGACCAGTGAGAAGACAGTGTTGACAGGAGCCAGTGGACATCTGAGAAGCGTCTCCATCAAG
Seq A exon
GTCCGCACCAAGAAGGACACTCTCCCAGAATCACGGCAGGCCACCAAGACAATGGAGGCCCATCCCTACAGCACTATGCACAACTCCAACAACTACCTACACTTGTCAGTGTCACGAATGGAGCTCAAGCCGGGGGACAACCTCAATGTCAACTTCCACCTGCGCACAGACCCAGGCCATGAGGCCAAGATCCGATACTACACCTACCTG
Seq C2 exon
ACCAAGCAAAATGAGGCCTTCTCTCTAACAGCCAAAGGAAAAGGCCGAGGCACATTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024164_MULTIEX1-10/38=C1-29
Average complexity
C3
Mappability confidence:
97%=100=97%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.471 C2=0.090
Domain overlap (PFAM):
C1:
NO
A:
PF077039=A2M_N_2=PU(24.8=52.9)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCATTACTCCCAATGTCCTACG
R:
GACAATGTGCCTCGGCCTTTT
Band lengths:
244-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types