MmuEX6078740 @ mm10
Exon Skipping
Gene
ENSMUSG00000024164 | C3
Description
complement component 3 [Source:MGI Symbol;Acc:MGI:88227]
Coordinates
chr17:57209589-57226882:-
Coord C1 exon
chr17:57226693-57226882
Coord A exon
chr17:57211572-57211735
Coord C2 exon
chr17:57209589-57209648
Length
164 bp
Sequences
Splice sites
3' ss Seq
GGTGGGGTGTCTCTCTGCAGATC
3' ss Score
9.16
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GTATTCCATCATTACTCCCAATGTCCTACGGCTGGAGAGCGAAGAGACCATCGTACTGGAGGCCCACGATGCTCAGGGTGACATCCCAGTCACAGTCACTGTGCAAGACTTCCTAAAGAGGCAAGTGCTGACCAGTGAGAAGACAGTGTTGACAGGAGCCAGTGGACATCTGAGAAGCGTCTCCATCAAG
Seq A exon
ATCGGAACCGCTGGGAGGAGCCTGACCAGCAGCTCTACAACGTAGAGGCCACATCCTACGCCCTCCTGGCCCTGCTGCTGCTGAAAGACTTTGACTCTGTGCCCCCTGTAGTGCGCTGGCTCAATGAGCAAAGATACTACGGAGGCGGCTATGGCTCCACCCAG
Seq C2 exon
ACCAAGCAAAATGAGGCCTTCTCTCTAACAGCCAAAGGAAAAGGCCGAGGCACATTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024164_MULTIEX1-27/38=C1-29
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.055 C2=0.090
Domain overlap (PFAM):
C1:
NO
A:
PF076789=A2M_comp=FE(23.1=100)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCATTACTCCCAATGTCCTACGG
R:
ACAATGTGCCTCGGCCTTTTC
Band lengths:
242-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types