RnoEX0015699 @ rn6
Exon Skipping
Gene
ENSRNOG00000046834 | C3
Description
complement C3 [Source:RGD Symbol;Acc:2232]
Coordinates
chr9:9737926-9740330:+
Coord C1 exon
chr9:9737926-9738082
Coord A exon
chr9:9738906-9739069
Coord C2 exon
chr9:9740172-9740330
Length
164 bp
Sequences
Splice sites
3' ss Seq
CTGGGGTGTCTTCTCTGCAGATC
3' ss Score
10.32
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
AGCCTTCCCGGGAGCATCAACAAGGCAGGGGAGTATCTTGAAGCCAGTTACCTGAACCTGCAGAGACCATACACAGTAGCCATTGCTGGGTATGCCCTGGCCCTGATGAACAAACTGGAGGAACCTTACCTCACCAAGTTTCTGAACACAGCCAAAG
Seq A exon
ATCGGAACCGCTGGGAGGAGCCTGGCCAGCAGCTCTACAATGTGGAGGCCACCTCCTACGCCCTCCTGGCCCTGCTGCTGCTGAAAGACTTTGACTCTGTGCCTCCTGTGGTGCGCTGGCTCAACGAGCAAAGATACTACGGAGGTGGCTATGGCTCCACGCAG
Seq C2 exon
GCTACCTTCATGGTATTCCAAGCCTTGGCTCAATACCAAACAGATGTCCCTGACCACAAGGACTTGAACATGGATGTGTCCCTCCACCTCCCCAGCCGCAGCTCCCCAACTGTGTTTCGCCTGCTATGGGAAAGTGGCAGTCTCCTGAGATCAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046834-'40-51,'40-50,41-51
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.019
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(22.2=100)
A:
PF076789=A2M_comp=FE(23.1=100)
C2:
PF076789=A2M_comp=PD(5.6=24.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGAACCTGCAGAGACCAT
R:
CTGCCACTTTCCCATAGCAGG
Band lengths:
248-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]