MmuEX6078740 @ mm9
Exon Skipping
Gene
ENSMUSG00000024164 | C3
Description
complement component 3 [Source:MGI Symbol;Acc:MGI:88227]
Coordinates
chr17:57349588-57352184:-
Coord C1 exon
chr17:57352028-57352184
Coord A exon
chr17:57350995-57351158
Coord C2 exon
chr17:57349588-57349746
Length
164 bp
Sequences
Splice sites
3' ss Seq
GGTGGGGTGTCTCTCTGCAGATC
3' ss Score
9.16
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
AGCCTTCCTGGGAGCATCAACAAGGCAGGGGAGTATATTGAAGCCAGTTACATGAACCTGCAGAGACCATACACAGTGGCCATTGCTGGGTATGCCCTGGCCCTGATGAACAAACTGGAGGAACCTTACCTCGGCAAGTTTCTGAACACAGCCAAAG
Seq A exon
ATCGGAACCGCTGGGAGGAGCCTGACCAGCAGCTCTACAACGTAGAGGCCACATCCTACGCCCTCCTGGCCCTGCTGCTGCTGAAAGACTTTGACTCTGTGCCCCCTGTAGTGCGCTGGCTCAATGAGCAAAGATACTACGGAGGCGGCTATGGCTCCACCCAG
Seq C2 exon
GCTACCTTCATGGTATTCCAAGCCTTGGCCCAATATCAAACAGATGTCCCTGACCATAAGGACTTGAACATGGATGTGTCCTTCCACCTCCCCAGCCGTAGCTCTGCAACCACGTTTCGCCTGCTCTGGGAAAATGGCAACCTCCTGCGATCGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024164-'30-29,'30-28,31-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.055 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(22.2=100)
A:
PF076789=A2M_comp=FE(23.1=100)
C2:
PF076789=A2M_comp=PD(5.6=24.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGACCATACACAGTGGC
R:
ATCGCAGGAGGTTGCCATTTT
Band lengths:
249-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: