BtaEX6038663 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017280 | C3
Description
Bos taurus complement component 3 (C3), mRNA. [Source:RefSeq mRNA;Acc:NM_001040469]
Coordinates
chr7:19016826-19020260:+
Coord C1 exon
chr7:19016826-19016982
Coord A exon
chr7:19018631-19018794
Coord C2 exon
chr7:19020102-19020260
Length
164 bp
Sequences
Splice sites
3' ss Seq
GTGGGGGGTTCTCCCTGCAGAAA
3' ss Score
9.15
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
AGCCTGGGCCGCAGCATCGCTAAGGCAGGAGACTTCCTCGAAAACCACTACAGAGAGTTGCGAAGACCATATACTGTGGCCATTGCTGCCTATGCCCTGGCTTTGTTGGGCAAGCTGGAGGGTGACCGCCTCACCAAATTTCTGAACACAGCCAAAG
Seq A exon
AAAAGAACCGCTGGGAGGAACCCAACCAGAAGCTCTACAATGTGGAGGCCACGTCCTACGCCCTCTTGGCTCTGCTGGCACGCAAAGACTACGACACTACGCCTCCTGTCGTGCGCTGGCTCAACGAGCAGAGATACTATGGAGGTGGTTATGGCTCCACGCAG
Seq C2 exon
GCCACTTTCATGGTGTTCCAAGCCTTGGCCCAATACCAGAAGGATGTTCCTGATCACAAGGAGCTGAACCTGGATGTGTCCATCCAACTGCCCAGCCGCAACTCTGCGGTCAGGCATCGTATCCTCTGGGAATCTGCCAGCCTCCTGCGCTCAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017280-'38-43,'38-40,40-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(22.2=100)
A:
PF076789=A2M_comp=FE(23.1=100)
C2:
PF076789=A2M_comp=PD(5.6=24.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACTACAGAGAGTTGCGAA
R:
CCCAGAGGATACGATGCCTGA
Band lengths:
244-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]