DreEX6034045 @ danRer10
Exon Skipping
Gene
ENSDARG00000093198 | C3 (8 of 8)
Description
complement component 3 [Source:HGNC Symbol;Acc:HGNC:1318]
Coordinates
chr1:55330312-55334448:-
Coord C1 exon
chr1:55334298-55334448
Coord A exon
chr1:55331956-55332119
Coord C2 exon
chr1:55330312-55330467
Length
164 bp
Sequences
Splice sites
3' ss Seq
TTTGAATGAATGCTATACAGACA
3' ss Score
1.63
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
AGTCTTGACAGCAGCATATATAAAGCCATTGCCTACCTTAAGTCTCAGTTGCAAGGGCTGATCAATCCGTACGCAGTGGCCATGGCATCTTACGCTTTAGCCAATGCGAACTCTCTCAACAAGCAAGTGCTGATGAGTAAAGCTTCCGCAG
Seq A exon
ACAAAAGCCACTGGCCTGTTCCTGGAAGCAGCAGCTTTACTCTGGAGGCTTCGTCTTATGCGCTTCTGGCTCTTGTTAAATTGCATGACTACCAGAACACAGCTCCTATTGTAAACTGGCTCAACAACCAGAGGCAGTACAACGGAGGATACGGCACCACTCAG
Seq C2 exon
GCCACCATCATGGTGTTCCAGGCGGTCGCTGAGTACAGGATTCATGCCAAAAACATAAAGCAGCTGGACCTGGAGCTGTCCATCCGTGTGGAAGGTGTTCGGCCCACTGTGTTTACCTTCAGCAAAAACAACGATCACCTCTCACAAACAGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093198-'28-31,'28-30,29-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(21.6=100)
A:
PF076789=A2M_comp=FE(23.4=100)
C2:
PF076789=A2M_comp=PD(5.6=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAAGGGCTGATCAATCCG
R:
GCTGTTTGTGAGAGGTGATCGT
Band lengths:
255-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]