GgaEX6047427 @ galGal3
Exon Skipping
Gene
ENSGALG00000011509 | C3
Description
NA
Coordinates
chrUn_random:18877761-18879523:-
Coord C1 exon
chrUn_random:18879348-18879523
Coord A exon
chrUn_random:18878051-18878263
Coord C2 exon
chrUn_random:18877761-18877955
Length
213 bp
Sequences
Splice sites
3' ss Seq
CCGTGCCTCCCGTGCTGCAGGTG
3' ss Score
8.8
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
CGTCCCATGCCATACTGCATCCTCCACAGGTTTATGTCACCAACCCCGATAATTCCCCGGCTCCGCGCATCCCCGTCAAGGCCGACAACTTCCAGGGCCTCGTCTCCACGCAGCGAGATGGCACAGCCAAGCTGGTCCTCAACATGCCAGCCAACAAGAACTCCGTCCCCATCACT
Seq A exon
GTGAGGACAGACCAGAAGGATCTGCCCCCGGAGCGCCAGGCCTCGCGGCAGATAGTGGCCGAGGCGTATCAAAGCCAGGGGAACTCTGGCAACTACCTTCACCTGGCAGTGGGTGCCAGCCAGGTGCAGCCCGGGGACAACCTCCCCATCAACTTCCATCTCAAGAGCAACAGAGATGACGTCCGCAAATCCGTTTCCTACTTCACCTACCTG
Seq C2 exon
ATCCTGAGCAAGGGGCACATTGTCCACGTGGGACGGCAGCCAAGGGAAGGTGACCAGAGCCTGGTCACGATGTCGCTTCCCGTGACGGCCAACCTCATCCCTTCCTTCCGTATCGTGGCCTACTACCACGTGAAGCCTGGCGAGATCATTGCTGACTCCGTCTGGGTCGATGTCAAGGACACCTGCATGGGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011509-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.661 A=0.423 C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
PF077039=A2M_N_2=PU(25.7=53.5)
C2:
PF077039=A2M_N_2=FE(43.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATACTGCATCCTCCACAG
R:
TGGTAGTAGGCCACGATACGG
Band lengths:
296-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]