BtaEX6038686 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017280 | C3
Description
Bos taurus complement component 3 (C3), mRNA. [Source:RefSeq mRNA;Acc:NM_001040469]
Coordinates
chr7:18991717-18993935:+
Coord C1 exon
chr7:18991717-18991879
Coord A exon
chr7:18991988-18992058
Coord C2 exon
chr7:18993841-18993935
Length
71 bp
Sequences
Splice sites
3' ss Seq
TCTGTCCCACCACCTCTCAGTCC
3' ss Score
6.86
5' ss Seq
GAGGTACCA
5' ss Score
6.43
Exon sequences
Seq C1 exon
ATCCCGGCCAGCAAAGAGTTAAAATCCGACAAGGGGCACAAGTTCGTGACTGTCGTAGCGACCTTCGGGAATGTCCAGGTGGAGAAGGTGGTGCTGATCAGCCTTCAGAGCGGGTACCTCTTCATCCAGACGGACAAGACCATCTACACCCCAGGCTCCACGG
Seq A exon
TCCTCTATCGGGTCTTCACTGTTGACCACAAGCTGCTGCCCGTGGGCCAGACGGTTTTCATCACCATCGAG
Seq C2 exon
ACCCCTGATGGCATCCCTGTCAAGCGGGACTCCAAGTCTTCTCAGAACCAGTTTGGCATTTTGACCTTGTCCTGGAACATTCCAGAGCTAGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017280-'3-4,'3-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PU(16.7=29.1)
A:
PF0183514=A2M_N=FE(24.0=100)
C2:
PF0183514=A2M_N=FE(32.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATCCGACAAGGGGCACAA
R:
CTTGACAGGGATGCCATCAGG
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]