DreEX6034095 @ danRer10
Exon Skipping
Gene
ENSDARG00000012694 | c3a.1
Description
complement component c3a, duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-35]
Coordinates
chr1:55501315-55504212:-
Coord C1 exon
chr1:55504044-55504212
Coord A exon
chr1:55502992-55503065
Coord C2 exon
chr1:55501315-55501403
Length
74 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGATCTCTTCTTCAGTTC
3' ss Score
8.83
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
ATCCCTGATGATCAGAACTTGTTCTCCGATGATCCTCTGGAGAAGCAGTATGTGTATCTGCAAGCTATTTTCCCGGATCACACTCTGGAGAAAGTGGTCTTGCTGTCGTTCCAGTCTGGATATATATTTGTACAGACTGACAAGCCCATCTACACGCCTTCTAGCACAG
Seq A exon
TTCAGTACAGGACTTTGTCTCTGACGCCCAACTTGAAACCACTCAGTCAGACTGGAATCACTGTGGAAATCATG
Seq C2 exon
AATCCACAAAACATCACAGTTTCATCAGACAAGGTATATCCAGTGAAAGGAATGAAGTCTGGAAAGTATGCCATCCCTGAGGTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012694-'3-4,'3-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PU(16.8=28.1)
A:
PF0183514=A2M_N=FE(25.3=100)
C2:
PF0183514=A2M_N=FE(30.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGTGGTCTTGCTGTCGT
R:
GCAACCTCAGGGATGGCATAC
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]