MmuEX6078715 @ mm9
Exon Skipping
Gene
ENSMUSG00000024164 | C3
Description
complement component 3 [Source:MGI Symbol;Acc:MGI:88227]
Coordinates
chr17:57364639-57365754:-
Coord C1 exon
chr17:57365589-57365754
Coord A exon
chr17:57365420-57365490
Coord C2 exon
chr17:57364639-57364733
Length
71 bp
Sequences
Splice sites
3' ss Seq
GTCTCCCTCACATCCTCCAGTCT
3' ss Score
6.54
5' ss Seq
GAGGTACCA
5' ss Score
6.43
Exon sequences
Seq C1 exon
ATTCCAGCCAGTAAGGAATTCAACTCAGATAAGGAGGGGCACAAGTACGTGACAGTGGTGGCAAACTTCGGGGAAACGGTGGTGGAGAAAGCAGTGATGGTAAGCTTCCAGAGTGGGTACCTCTTCATCCAGACAGACAAGACCATCTACACCCCTGGCTCCACTG
Seq A exon
TCTTATATCGGATCTTCACTGTGGACAACAACCTACTGCCCGTGGGCAAGACAGTCGTCATCCTCATTGAG
Seq C2 exon
ACCCCCGATGGCATTCCTGTCAAGAGAGACATTCTGTCTTCCAACAACCAACACGGCATCTTGCCTTTGTCTTGGAACATTCCTGAACTGGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024164-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PU(16.7=28.6)
A:
PF0183514=A2M_N=FE(24.0=100)
C2:
PF0183514=A2M_N=FE(32.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGTGACAGTGGTGGCAAAC
R:
ATGCCGTGTTGGTTGTTGGAA
Band lengths:
180-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: