BtaEX6038734 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021018 | KHSRP
Description
KH-type splicing regulatory protein [Source:HGNC Symbol;Acc:HGNC:6316]
Coordinates
chr7:19260187-19262826:+
Coord C1 exon
chr7:19260187-19260278
Coord A exon
chr7:19262117-19262213
Coord C2 exon
chr7:19262788-19262826
Length
97 bp
Sequences
Splice sites
3' ss Seq
GCTCGCAACTTCACTTCTAGATC
3' ss Score
6.7
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
NGTCGGCCGGTGGCCCCTCGCAGCCACCCGGCGGGGGCGGCCCGGGAATCCGCAAGGACGCCTTCGCAGACGCCGTGCAGCGGGCCCGCCAG
Seq A exon
ATCGCAGCCAAGATTGGAGGCGACGCAGCTACCACAGTGAATAACAGCACTCCTGATTTTGGTTTTGGGGGCCAAAAGAGGCAGTTAGAAGATGGAG
Seq C2 exon
ACCAACCAGAGAGCAAGAAGCTGGCTTCCCAGGGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021018-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGACGCCTTCGCAGAC
R:
AGTCTCCCTGGGAAGCCAG
Band lengths:
79-176
Functional annotations
There are 1 annotated functions for this event
PMID: 16914741
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: glutathione s tranferase tag, mutation analysis, pull down, two hybrid. ELM ID: ELMI002513; ELM sequence: FADAVQRARQI; Overlap: PARTIAL_LEFT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]