MmuEX6078675 @ mm10
Exon Skipping
Gene
ENSMUSG00000007670 | Khsrp
Description
KH-type splicing regulatory protein [Source:MGI Symbol;Acc:MGI:1336214]
Coordinates
chr17:57027956-57031507:-
Coord C1 exon
chr17:57031148-57031507
Coord A exon
chr17:57029042-57029138
Coord C2 exon
chr17:57027956-57027994
Length
97 bp
Sequences
Splice sites
3' ss Seq
ATATTTCTACCTCACCCTAGATT
3' ss Score
8.08
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
ATCGTGCTCCGCGGCCGTGTGGAGCGAGGCCTTGTTCCCGCGTTGAGCCGCCGCCGCCTCCGCCTCCTCAGCTTGAAGCCTCCGCACCAAGCCCGTCCCCGCCGCGCCATGTCGGACTACAACACCGGAGGTCCCCCGCCCGGCCCGCCGCCTCCCGCTGGCGGCGGAGGGGGAGCCGCGGGTGCGGGAGGAGGCCCTCCGCCGGGCCCGCCGGGCGCGGGAGACCGGGGCGGCGGAGGCCCTGGCGGCGGCGGCCCGGGTGGAGGAGGCGCGTCCGGGGGCCCCTCACAGCCTCCCGGTGGCGGCGGCCCTGGGATCCGCAAGGACGCCTTCGCCGACGCCGTGCAGCGGGCCCGCCAG
Seq A exon
ATTGCAGCCAAAATCGGAGGTGATGCTGCTACCACCGTGAATAACAACACTCCTGATTTTGGCTTTGGGGGCCAAAAGAGACAGCTGGAAGATGGAG
Seq C2 exon
ACCAGCCAGACAGCAAGAAACTGGCTTCCCAGGGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007670-'2-1,'2-0,5-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCACAGCCTCCCGGTG
R:
CCCTGGGAAGCCAGTTTCTTG
Band lengths:
111-208
Functional annotations
There are 1 annotated functions for this event
PMID: 16914741
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: glutathione s tranferase tag, mutation analysis, pull down, two hybrid. ELM ID: ELMI002513; ELM sequence: FADAVQRARQI; Overlap: PARTIAL_LEFT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types