RnoEX6038545 @ rn6
Exon Skipping
Gene
ENSRNOG00000047628 | Khsrp
Description
KH-type splicing regulatory protein [Source:RGD Symbol;Acc:621828]
Coordinates
chr9:10013854-10016772:+
Coord C1 exon
chr9:10013854-10014181
Coord A exon
chr9:10016141-10016237
Coord C2 exon
chr9:10016734-10016772
Length
97 bp
Sequences
Splice sites
3' ss Seq
GTACTTCTACCTCACCCTAGATT
3' ss Score
7.89
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
AGGCCTTGTTCCCGCGTTGAGCCGCCGCCGCCTCCTCAGCTTGAAGCCTCCGCGCCAGGCCCGTCCCCGCCGCACCATGTCGGACTACAGCACCGGAGGTCCCCCGCCCGGCCCGCCGCCTCCCGCTGGCGGAGGAGGAGGAGCCGCGGGTGCGGGAGGAGGCCCTCCGCCGGGCCCGCCGGGTGCGGGAGACCGGGGCGGCGGAGGCCCTGGCGGCGGCGGCCCGGGTGGAGGAGGCGCGTCCGGGGGCCCTTCGCAGCCTCCGGGTGGCGGCGGTCCGGGGATACGCAAGGACGCCTTCGCCGACGCCGTGCAGCGGGCCCGCCAG
Seq A exon
ATTGCAGCCAAAATCGGAGGTGATGCTGCTACCACCGTGAATAACAACACTCCTGATTTCGGTTTTGGGGGCCAAAAGAGACAGCTGGAAGATGGAG
Seq C2 exon
ACCAGCCAGACAGCAAGAAACTGGCTTCCCAGGGAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047628-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCGGAGGAGGAGGAG
R:
TTTCTTGCTGTCTGGCTGGT
Band lengths:
223-320
Functional annotations
There are 1 annotated functions for this event
PMID: 16914741
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: glutathione s tranferase tag, mutation analysis, pull down, two hybrid. ELM ID: ELMI002513; ELM sequence: FADAVQRARQI; Overlap: PARTIAL_LEFT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]