BtaEX6039074 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000755 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29189]
Coordinates
chr7:21396611-21401094:+
Coord C1 exon
chr7:21396611-21396785
Coord A exon
chr7:21399458-21399596
Coord C2 exon
chr7:21400997-21401094
Length
139 bp
Sequences
Splice sites
3' ss Seq
GTTGTATGTGCACCTTGCAGGTG
3' ss Score
7.14
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
Exon sequences
Seq C1 exon
CAGCCGCCCCAGCCCCTCAGCCCGGATCCTGAAAGGCGTGATGCGGGTCGGCCTCCTGGCGAAGGGGCTACTCCTGCGTGGAGACCGGGCGGTACAGCTGATCCTGCTCTGCTCCCAGAAGCCCACCCGCGCCCTGCAGCGCAGAGTCGCCGAGCAGCTGCCTCTCCAGCTCCCG
Seq A exon
GTGGTAACAGACGACAAGTACGAGGTCTCTTCTGACCCAGACGCCAGCATTGTCATCTCCTCCTGCGAGGAGCCCCGGATACAGGTCGCTGTGTCCATCACCTCGCCCCTAATGCGGGAGGACCCCTCCGCAGACCAAG
Seq C2 exon
AAGGAACCGAGGTGCCTCTGCCGGACCCAGGAGACGTGCTGAGCCCAGAGAAGTGCCTGCAGGCACTGGCTGCTCTCCGCCACGCCAAGTGGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000755-'18-19,'18-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=0.255 C2=0.333
Domain overlap (PFAM):
C1:
PF075289=DZF=PU(17.4=72.9)
A:
PF075289=DZF=FE(18.6=100)
C2:
PF075289=DZF=FE(13.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATCCTGAAAGGCGTGATG
R:
ACTTGGCGTGGCGGAGAG
Band lengths:
243-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]