MmuEX6050066 @ mm10
Exon Skipping
Gene
ENSMUSG00000034949 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:MGI Symbol;Acc:MGI:2143792]
Coordinates
chr10:81247219-81249078:+
Coord C1 exon
chr10:81247219-81247393
Coord A exon
chr10:81248390-81248528
Coord C2 exon
chr10:81248984-81249078
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTTTTCATGTTTATACACAGATA
3' ss Score
8.34
5' ss Seq
AAGGTGCAC
5' ss Score
4.22
Exon sequences
Seq C1 exon
CACCCTGGCGTCCCCACCACCGAGGATGCTGAAGGGTGTGGTGCGGGTTGGCATTCTGGCCAAGGGCCTTGTCCTCCGTGGGGACCACAGTGTACAGCTGACCCTGCTCTGCTCCAAGAAGCCCACGCACTCCCTGCTGCAGAGGATCAAGCAGGAGCTGCCCCGAGAGCTGTCT
Seq A exon
ATAGTGGCAGAAGACAAGTACGAGGTCTCATCTGACCATGACGCCAACATTGTTATCTCAGCCTGTGTGGAGCCTGGGGTGAAGGTCACCGTGTCTGCCACCTCACCTCTGATGCGGGAAGATCCCTCTGTAAAACAAG
Seq C2 exon
GACAGCAAGACGCTCTGTCCGACCCAGAGGACGTCTTAGACCGGGAGAGGTGCCTTGAGACCCTGGCAGCCCTCCGCCATGCTAAGTGGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034949-'17-31,'17-22,26-31=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=0.279 C2=0.231
Domain overlap (PFAM):
C1:
PF075289=DZF=PU(17.4=72.9)
A:
PF075289=DZF=FE(18.6=100)
C2:
PF075289=DZF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGCTGAAGGGTGTGGTG
R:
GAACCACTTAGCATGGCGGAG
Band lengths:
244-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types