MmuEX6050066 @ mm9
Exon Skipping
Gene
ENSMUSG00000034949 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:MGI Symbol;Acc:MGI:2143792]
Coordinates
chr10:80709964-80711823:+
Coord C1 exon
chr10:80709964-80710138
Coord A exon
chr10:80711135-80711273
Coord C2 exon
chr10:80711729-80711823
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTTTTCATGTTTATACACAGATA
3' ss Score
8.34
5' ss Seq
AAGGTGCAC
5' ss Score
4.22
Exon sequences
Seq C1 exon
CACCCTGGCGTCCCCACCACCGAGGATGCTGAAGGGTGTGGTGCGGGTTGGCATTCTGGCCAAGGGCCTTGTCCTCCGTGGGGACCACAGTGTACAGCTGACCCTGCTCTGCTCCAAGAAGCCCACGCACTCCCTGCTGCAGAGGATCAAGCAGGAGCTGCCCCGAGAGCTGTCT
Seq A exon
ATAGTGGCAGAAGACAAGTACGAGGTCTCATCTGACCATGACGCCAACATTGTTATCTCAGCCTGTGTGGAGCCTGGGGTGAAGGTCACCGTGTCTGCCACCTCACCTCTGATGCGGGAAGATCCCTCTGTAAAACAAG
Seq C2 exon
GACAGCAAGACGCTCTGTCCGACCCAGAGGACGTCTTAGACCGGGAGAGGTGCCTTGAGACCCTGGCAGCCCTCCGCCATGCTAAGTGGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034949-'16-15,'16-13,17-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=0.316 C2=0.243
Domain overlap (PFAM):
C1:
PF075289=DZF=PU(31.9=72.9)
A:
PF075289=DZF=FE(34.1=100)
C2:
PF075289=DZF=FE(25.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGCTGAAGGGTGTGGTG
R:
GAACCACTTAGCATGGCGGAG
Band lengths:
244-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: