DreEX0086446 @ danRer10
Exon Skipping
Gene
ENSDARG00000071683 | zfr2
Description
zinc finger RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070705-184]
Coordinates
chr22:4678000-4684322:-
Coord C1 exon
chr22:4684154-4684322
Coord A exon
chr22:4681834-4681981
Coord C2 exon
chr22:4678000-4678085
Length
148 bp
Sequences
Splice sites
3' ss Seq
AGTGTCCTTTTAACCGGCAGACC
3' ss Score
7.28
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
GTCGGAGACTCAGTCTCGTACTCTTAAAGGAGTGATGCGGGTGGGAATCCTGGCTAAAGGCTTGCTCCTGCGCGGAGACCGTAACGTTCAGCTAATCCTGCTAGCAGCTAACAAACCCACCGTTTCTCTTCTGAAGACTGTAGCGGAGCAACTGCCCAAACAGCTAGCT
Seq A exon
ACCTTTTCTGAAGATCAGTATGAGGTGCAGGTACACCCTGAGGAAGCCAACATCGTCATTTTTTCAAGCAAGGAACCAAAAATGCAGGTCACCATCTCTCTTACCTCACCAGTGATGCGCGAAGACCCCGTCCCGAACATGGAGAAAG
Seq C2 exon
TGTCAGAGAAAGACCCTCCGGATCTTCTGAACAGGATCAAGTGCCTTGAGTATTTAGCGGCTCTGCGACATGCTAAATGGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071683_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.230 C2=0.153
Domain overlap (PFAM):
C1:
PF075289=DZF=PU(17.4=75.4)
A:
PF075289=DZF=FE(19.8=100)
C2:
PF075289=DZF=FE(11.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTCAGTCTCGTACTCTTAAAGGA
R:
ATTTAGCATGTCGCAGAGCCG
Band lengths:
242-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]