RnoEX6030404 @ rn6
Exon Skipping
Gene
ENSRNOG00000020416 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:RGD Symbol;Acc:1304737]
Coordinates
chr7:11338147-11339788:-
Coord C1 exon
chr7:11339614-11339788
Coord A exon
chr7:11338670-11338808
Coord C2 exon
chr7:11338147-11338241
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTTTTCATGTTTATACCCAGATA
3' ss Score
7.5
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
TACCCTGGTGTCCCCACCACCGAGGATGCTCAAGGGAGTGGTGCGGGTTGGCATTCTGGCCAAGGGCCTGGTCCTTCGCGGGGACCACAGTGTACAGCTGACCTTGCTGTGCTCCAAGAAGCCTACGCACTCCCTGCTGCAGAGGATCAAGCAGGAGCTGCCCCGAGAGCTGTCT
Seq A exon
ATAGTGGCAGAGGACAAGTACGAGGTCTCATCTGACCATGACGCCAACATTGTTATCTCGGCCTGTGTGGAGCCTGGGGTGAAGGTCACCGTGTCTGCCACCTCACCTCTGATGCGGGAAGACCCTTCCGTAAAACAAG
Seq C2 exon
AACTGCAAGACTCTCTGTCTGACCCAGAGGACATCCTGGACCGGGAGAGGTGCCTCGAGACCCTGGCAGCCCTCCGCCATGCAAAGTGGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020416-'21-24,'21-21,22-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=0.213 C2=0.188
Domain overlap (PFAM):
C1:
PF075289=DZF=PU(17.4=72.9)
A:
PF075289=DZF=FE(18.6=100)
C2:
PF075289=DZF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGATGCTCAAGGGAGTGGT
R:
GAACCACTTTGCATGGCGGAG
Band lengths:
246-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]