BtaEX6039572 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015307 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr7:26697477-26703931:+
Coord C1 exon
chr7:26697477-26697520
Coord A exon
chr7:26698332-26698414
Coord C2 exon
chr7:26703833-26703931
Length
83 bp
Sequences
Splice sites
3' ss Seq
ACTTCACTTGTCTCTCGCAGGCC
3' ss Score
10.35
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
Exon sequences
Seq C1 exon
GCTAGCCGCGTCCGCAGGCGAGGACAACAGGACGTGCTCCGAGG
Seq A exon
GCCCAACGTATGCGGATCCAGGTTCCACTCCTACTGCTGCCCCGGATGGAAGACGCTCCCTGGAGGAAACCAGTGCATTGTCC
Seq C2 exon
CAATTTGTAGAAATAGTTGCGGAGATGGATTTTGTTCCCGTCCTAACATGTGTACTTGTTCCAGCGGCCAAATATCACCAACCTGTGGATCAAAATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015307-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCGAGGACAACAGGAC
R:
TGATTTTGATCCACAGGTTGGTGA
Band lengths:
128-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]