DreEX0032251 @ danRer10
Exon Skipping
Gene
ENSDARG00000087398 | fbn2b
Description
fibrillin 2b [Source:ZFIN;Acc:ZDB-GENE-090112-3]
Coordinates
chr22:4236290-4260227:-
Coord C1 exon
chr22:4259949-4260227
Coord A exon
chr22:4238161-4238243
Coord C2 exon
chr22:4236290-4236388
Length
83 bp
Sequences
Splice sites
3' ss Seq
GCTTGTTTCCATTGTTTCAGGCC
3' ss Score
9.03
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
Exon sequences
Seq C1 exon
CCTGGAGTGCTCTTGGATCAAGCTCAAAATAGTGTCTGAAGAGCTCACTGGAAAGGAAGAGTTTTATTAAGGGTGAGGCACATTTACCGGCGCTTCAGGAGTCGCACAGCAGGGGCCAATGGGAGTGTGGAAGCTGGCCAACGTGGTGCTATGGTGGGCCGCAGTCCATTCGGTGCAAGGGCAAGGAGATGGAGACATCCAGGCCAGCCGATTCACTGGAAAACCTGAGGGGGAGGTGCAGCAGAGGGTCCGGCGAAGGGGCCAGGAGTCCCTCAGGGG
Seq A exon
GCCCAACGTATGCGGTTCCCGCTTCCACTCCTATTGTTGTCCAGGATGGAAAACGCTTCCTGGAGGGAACCAGTGTATAGTTC
Seq C2 exon
CAATCTGTAGGAACTCCTGTGGTGATGGCTTTTGCTCGAGGCCCAACATGTGTACCTGTTCGAGTGGTCATCTTGCCCCTAGCTGTGGTGCGGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087398-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.389 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGGCAAGGAGATGGAGAC
R:
GGCAAGATGACCACTCGAACA
Band lengths:
181-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]