GgaEX0000265 @ galGal4
Exon Skipping
Gene
ENSGALG00000000327 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr28:274643-297662:+
Coord C1 exon
chr28:274643-274943
Coord A exon
chr28:295350-295432
Coord C2 exon
chr28:297564-297662
Length
83 bp
Sequences
Splice sites
3' ss Seq
AAACTGTTTTTAATTTTCAGACC
3' ss Score
8.77
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
Exon sequences
Seq C1 exon
AAAGCGAACGGCAGGAAGGCACCTTGGCATTTAAGGGCGGCTGCAAAAATCCATCCTCCACCAAGGCAGCAGGGACCCTCCAGCTGGAAGAAGATTTCGGGGCAGCCGGGAACCGTGGAATCCGTGCCATCATGGGGGTATTGTGGCTGGCCAGGTTCATGCTGGGATGTACAGCAGTTTTGTATGTGGAACAAGCCCAGGGTCAATATGAAGGGGACTTGCAGACAGACAGATTTGCAGGCTATGAGGAAAGACAGCCAGCAAACAGAGTGAGAAGAAGAGGCCAAGACACTTTACGAGG
Seq A exon
ACCCAATGTCTGTGGCTCAAGGTTCCACTCCTACTGCTGCCCTGGCTGGAAAACGCTGCCTGGAGGGAACCAGTGCATTGTCC
Seq C2 exon
CAATTTGCAGAAATTCTTGTGGCGATGGATTTTGTTCACGGCCAAACATGTGTACGTGCTCCAATGGACAACTCTCTCCCAACTGTGGCTCAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.262 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGTGGAACAAGCCCAGGG
R:
ACACATGTTTGGCCGTGAACA
Band lengths:
173-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]