GgaEX0000265 @ galGal3
Exon Skipping
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:246402-269412:+
Coord C1 exon
chr28:246402-246693
Coord A exon
chr28:267100-267182
Coord C2 exon
chr28:269314-269412
Length
83 bp
Sequences
Splice sites
3' ss Seq
AAACTGTTTTTAATTTTCAGACC
3' ss Score
8.77
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
Exon sequences
Seq C1 exon
GGCAGGAAGGCACCTTGGCATTTAAGGGCGGCTGCAAAAATCCATCCTCCACCAAGGCAGCAGGGACCCTCCAGCTGGAAGAAGATTTCGGGGCAGCCGGGAACCGTGGAATCCGTGCCATCATGGGGGTATTGTGGCTGGCCAGGTTCATGCTGGGATGTACAGCAGTTTTGTATGTGGAACAAGCCCAGGGTCAATATGAAGGGGACTTGCAGACAGACAGATTTGCAGGCTATGAGGAAAGACAGCCAGCAAACAGAGTGAGAAGAAGAGGCCAAGACACTTTACGAGG
Seq A exon
ACCCAATGTCTGTGGCTCAAGGTTCCACTCCTACTGCTGCCCTGGCTGGAAAACGCTGCCTGGAGGGAACCAGTGCATTGTCC
Seq C2 exon
CAATTTGCAGAAATTCTTGTGGCGATGGATTTTGTTCACGGCCAAACATGTGTACGTGCTCCAATGGACAACTCTCTCCCAACTGTGGCTCAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327-'0-3,'0-2,1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.271 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGTGGAACAAGCCCAGGG
R:
ACACATGTTTGGCCGTGAACA
Band lengths:
173-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]