RnoEX6058876 @ rn6
Exon Skipping
Gene
ENSRNOG00000052190 | AABR07072602.1
Description
NA
Coordinates
chr18:53266468-53272041:-
Coord C1 exon
chr18:53272001-53272041
Coord A exon
chr18:53271071-53271153
Coord C2 exon
chr18:53266468-53266566
Length
83 bp
Sequences
Splice sites
3' ss Seq
ACCTTGTTTGTCCCCTGCAGGCC
3' ss Score
12.07
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
Exon sequences
Seq C1 exon
AGCCGGGTCCGCAGGCGAGGACAGCAGGAAATACTCCGAGG
Seq A exon
GCCCAACGTGTGCGGTTCTAGATTCCACTCCTATTGCTGCCCGGGATGGAAGACGCTCCCAGGAGGAAATCAGTGCATTGTCC
Seq C2 exon
CCATTTGCAGGAACAGCTGTGGAGACGGATTCTGTTCCCGCCCCAACATGTGTACTTGTTCCAGCGGACAAATATCCCCGACCTGTGGAGCAAAATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052190-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCGAGGACAGCAGGAAATA
R:
TGATTTTGCTCCACAGGTCGG
Band lengths:
127-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]