GgaEX1066027 @ galGal4
Exon Skipping
Gene
ENSGALG00000014686 | fbn2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C3A6]
Coordinates
chrZ:56744987-56749770:-
Coord C1 exon
chrZ:56748860-56749770
Coord A exon
chrZ:56748157-56748239
Coord C2 exon
chrZ:56744987-56745085
Length
83 bp
Sequences
Splice sites
3' ss Seq
CATATTTGTCTGTGTGACAGGCC
3' ss Score
7.71
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
Exon sequences
Seq C1 exon
CATCTCTACTCTTTTTTTTTTCTTTTTTTTTTTTAATTATTTTTCCTTCCCCCCCCCCCCCTCTTTGGAGAGAGAGGAGGGGGGATGCAACGTGGACCCTGCTGCTGGCACCACCGCGTCCCGCTGCAGCCTTCGGAGGAGGAGGAAGAGGAGAGAAGAAGGAGCCGCAGCGGCTGAAGCCTCCCCGCGAGGAACCGCGGAGCGCTGCCCCTCTCCCCGCCTCACCGCTCCTCCGCCGCTTCCCTCCGGGGCCGCCGCCGCAGCATGGGCAGACAGCGGTGGCTGTGCCTGCAGCCCTGCTTCCTGTGGCTCAGCTGCCTGGCGCTCTGCGCCCACGGAGCCGCCGGGCAACAAAAGCCGCCGCCGCGGGTCCGCCCTGCGGGAGGAGCGGGCGGCATCTACCCCGCCGCCGCCGTCGCGCACCGGGAGGAAGGGGCCGGCAGTGCCGCCGCCGCCGCGGGCCGGGTCCGCCGGCGGGGACAGCAGGAGGCGCTCCGCGG
Seq A exon
GCCAAATGTGTGTGGCTCTAGATTCCATTCCTACTGCTGCCCTGGATGGAAAACGCTCCCTGGAGGAAATCAGTGCATTGTTC
Seq C2 exon
CGATCTGTAGAAATAGCTGTGGTGATGGATTTTGCTCTCGCCCTAACATGTGCACTTGTGCAAGCGGACAAATATCACCTACTTGTGGACCAAAATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686-'0-1,'0-0,3-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGTGGCTCAGCTGC
R:
ACCACAGCTATTTCTACAGATCG
Band lengths:
223-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]