DreEX0032249 @ danRer10
Exon Skipping
Gene
ENSDARG00000051896 | fbn2a
Description
fibrillin 2a [Source:ZFIN;Acc:ZDB-GENE-090112-4]
Coordinates
chr10:16506272-16512529:-
Coord C1 exon
chr10:16511942-16512529
Coord A exon
chr10:16511615-16511697
Coord C2 exon
chr10:16506272-16506370
Length
83 bp
Sequences
Splice sites
3' ss Seq
TCACAGTTTTCTTTTTTAAGCCC
3' ss Score
5.49
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GTCGAACAAATATGCGCTATTCATATTATTATTATTATCTGGTTAAATTAAAGAACGATTTGCTATAGCAATACCCATTCACTCAAGAGTGCAGAGAGTTTTGTCGCGTCCAGCTGCTAGTGGGTAACGTTAGGATAGATTGGTGCTGGCTGGCGTCATGATTTTATATCGTTCAGTCAAACGTTTAGGATCCTCCTTCATTCTCTTCACTAAGTGCGCTCCTCCTGTACTTCAATTCTTATTCTTGTAGCTTTACTTTTCTGGTCAAAAACCGGATATGTTATGATTTCCCTTTCATCTCATGGACTAACAGACTGTAAAGGTACACTGGGTTAAATTGCACTAGGATATATCATGTCATCTCAGGGGGACCTCAGGTGTTTATTTGGATTTGTTGCTCTGTTGGGAATTTTAACGGGGAAAATCTCTGGAATTCATGGAAAAGCAACTGTTCATATTGATGGATCACAGAGACGCCAAAAACAAGAGTCCCTGAGAGG
Seq A exon
CCCTAATGTGTGTGGATCTCGTCTGCAGTCCTTCTGTTGTCCAGGCTGGAAGACTCTGCCTGGGGGCAACCAGTGTGTTGTGC
Seq C2 exon
CTATTTGCCGGAGTGACTGTGGGGATGGTTTCTGCTCCAGACCTAACATGTGCACATGTCCTGGTGGACAAACAGCTACAACCTGTTTTACTAAATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051896_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTTGTTGCTCTGTTGGGA
R:
GCACATGTTAGGTCTGGAGCA
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]