GgaEX1066027 @ galGal3
Exon Skipping
Gene
ENSGALG00000014686 | FBN2
Description
NA
Coordinates
chrZ:55835160-55839268:-
Coord C1 exon
chrZ:55839033-55839268
Coord A exon
chrZ:55838330-55838412
Coord C2 exon
chrZ:55835160-55835258
Length
83 bp
Sequences
Splice sites
3' ss Seq
CATATTTGTCTGTGTGACAGGCC
3' ss Score
7.71
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
Exon sequences
Seq C1 exon
ATGGGCAGACAGCGGTGGCTGTGCCTGCAGCCCTGCTTCCTGTGGCTCAGCTGCCTGGCGCTCTGCGCCCACGGAGCCGCCGGGCAACAAAAGCCGCCGCCGCGGGTCCGCCCTGCGGGAGGAGCGGGCGGCATCTACCCCGCCGCCGCCGTCGCGCACCGGGAGGAAGGGGCCGGCAGTGCCGCCGCCGCCGCGGGCCGGGTCCGCCGGCGGGGACAGCAGGAGGCGCTCCGCGG
Seq A exon
GCCAAATGTGTGTGGCTCTAGATTCCATTCCTACTGCTGCCCTGGATGGAAAACGCTCCCTGGAGGAAATCAGTGCATTGTTC
Seq C2 exon
CGATCTGTAGAAATAGCTGTGGTGATGGATTTTGCTCTCGCCCTAACATGTGCACTTGTGCAAGCGGACAAATATCACCTACTTGTGGACCAAAATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGTGGCTCAGCTGC
R:
ACCACAGCTATTTCTACAGATCG
Band lengths:
223-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]