BtaEX6039909 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020351 | SLC34A1
Description
Bos taurus solute carrier family 34 (sodium phosphate), member 1 (SLC34A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103223]
Coordinates
chr7:40249521-40251221:+
Coord C1 exon
chr7:40249521-40249688
Coord A exon
chr7:40250880-40250996
Coord C2 exon
chr7:40251097-40251221
Length
117 bp
Sequences
Splice sites
3' ss Seq
AACTGACAGTTTCCTCGCAGACT
3' ss Score
3.69
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GCAACCACATCTTTGTGGACACGGGGCTGCCTGACCTAGCTGTGGGGCTCATCCTGCTGGCTGGCTCCCTGGCACTCCTGTGCACCTGTCTCATCCTCCTTGTCAAGATGCTCAACTCTCTGCTCAAGGGCCAGGTGGCCAAGGTCATTCAGAAGGTTATCAACACTG
Seq A exon
ACTTTCCCACCCCTTTCACCTGGGCCACAGGCTACTTTGCCATGGTGGTAGGGGCCAGCATGACCTTTGTCGTCCAGAGCAGTTCTGTGTTCACCTCAGCCATCACCCCACTCATCG
Seq C2 exon
GCCTCGGTGTGATCAGCATTGAGCGCGCCTACCCGCTCACACTAGGCTCTAACATTGGTACCACCACCACGGCTATACTGGCTGCCCTGGCCAGCCCCCGGGAGAAGCTGTCCAGTGCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020351-'17-24,'17-22,18-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(19.1=47.4)
A:
PF0269010=Na_Pi_cotrans=FE(27.7=100)
C2:
PF0269010=Na_Pi_cotrans=FE(29.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTTTGTGGACACGGGG
R:
CAGTATAGCCGTGGTGGTGGT
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]