DreEX6056656 @ danRer10
Exon Skipping
Gene
ENSDARG00000028824 | slc34a1a
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-101006-3]
Coordinates
chr14:820683-824903:-
Coord C1 exon
chr14:824736-824903
Coord A exon
chr14:824236-824352
Coord C2 exon
chr14:820683-820807
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTTTGTGCATCAGATT
3' ss Score
7.57
5' ss Seq
TCGGTCAGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
GTCGTCATGTGTTCGTGGATACAGGGCTGTCAGATCTGGCTGTGGGACTCATTCTGCTGGCCGGATCTCTGATGCTGCTGTGCTCCTGCCTGCTGTTCATCGTTAAAGTGCTCAACTCACTTCTCAAAGGTCAAGTGGCCAAGGTCATCGAAGGGGTCATCAACACAG
Seq A exon
ATTTCCCGTATCCTCTAGGATGGCTGTCTGGATATCTGGCGATGCTGATGGGAGCAGGAATGACCTTCATCATCCAGAGCAGCTCCGTCTTCACCTCCGCCCTCACTCCACTCATCG
Seq C2 exon
GCATCGGTGTGATCAGTCTGAACCGAGCGTATCCTCTAACTCTGGGCTCCAACATCGGCACCACGACCACCGCCATCCTCGCTGCCCTCGCCAGCCCCAAAGAGAAGCTGCCCGCCGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028824-'15-13,'15-10,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(19.6=47.4)
A:
PF0269010=Na_Pi_cotrans=FE(27.7=100)
C2:
PF0269010=Na_Pi_cotrans=FE(29.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGCTGTGGGACTCATTCT
R:
CAGCTTCTCTTTGGGGCTGG
Band lengths:
244-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]