GgaEX1053283 @ galGal4
Exon Skipping
Gene
ENSGALG00000003075 | SLC34A1
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 1 [Source:HGNC Symbol;Acc:HGNC:11019]
Coordinates
chr13:9450992-9451864:+
Coord C1 exon
chr13:9450992-9451159
Coord A exon
chr13:9451511-9451627
Coord C2 exon
chr13:9451740-9451864
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTGTCTTGTGCCATGGCAGACC
3' ss Score
7.07
5' ss Seq
TCGGTCAGC
5' ss Score
4.32
Exon sequences
Seq C1 exon
GCGAGCACCTCTTCACGGACACGCCGCTGCCGGACCTGGCCGTGGGGCTGGTTCTGCTGGCCGGGTCCCTCGTCGTGCTCTGCACCTGCCTCATCCTCCTGGTCAAAATCCTCAACTCCCTGCTCAAGGGGCAGGTGGCCAAAGCCATCCAGAAGGTCATCAACACTG
Seq A exon
ACCTCCCACACCCATTCAGCTGGCTCACCGGGTACTTCGCCATGGTGGTGGGCGCTGGGATGACCTTCGTGGTCCAGAGCAGCTCCGTCTTCACCTCAGCCATCACACCACTGATCG
Seq C2 exon
GCTTGGGGGTGATCAGCATTGAGCGTGCCTACCCGCTGACCCTGGGCTCCAACATTGGCACCACCACCACCGCCATCCTGGCCGCGCTGGCCAGCCCCGGGGACAAGCTGGCTAGCTCCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003075-'19-40,'19-39,20-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(19.3=47.4)
A:
PF0269010=Na_Pi_cotrans=FE(27.9=100)
C2:
PF0269010=Na_Pi_cotrans=FE(29.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCACCTCTTCACGGACAC
R:
AGGATGGCGGTGGTGGTG
Band lengths:
245-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]