RnoEX0082273 @ rn6
Exon Skipping
Gene
ENSRNOG00000015262 | Slc34a1
Description
solute carrier family 34 member 1 [Source:RGD Symbol;Acc:3708]
Coordinates
chr17:9749584-9753142:-
Coord C1 exon
chr17:9752975-9753142
Coord A exon
chr17:9749833-9749949
Coord C2 exon
chr17:9749584-9749708
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGGATTTGGTTTCCTTTCAGACT
3' ss Score
7.87
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
GCAACCATATCTTCGTGGATACTGGGCTGCCCGACCTGGCCGTGGGGCTCATTCTGCTGGCGGGCTCCCTGGTGGTCCTGTGCACTTGTCTTATCCTCCTCGTCAAGATGCTCAACTCTCTGCTGAAGGGCCAAGTGGCCAATGTCATCCAGAAGGTCATCAACACAG
Seq A exon
ACTTCCCAGCCCCCTTCACTTGGGTCACAGGCTACTTTGCCATGGTGGTGGGCGCCAGCATGACGTTTGTTGTCCAGAGCAGTTCCGTGTTCACCTCAGCCATCACTCCGCTCATTG
Seq C2 exon
GCCTGGGTGTGATCAGTATTGAGCGGGCCTACCCTCTCACCCTGGGCTCCAACATTGGTACCACCACTACAGCCATCCTGGCAGCACTGGCCAGCCCCAGGGAGAAGCTCTCCAGCTCCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015262-'20-31,'20-27,23-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(19.3=47.4)
A:
PF0269010=Na_Pi_cotrans=FE(27.9=100)
C2:
PF0269010=Na_Pi_cotrans=FE(29.3=100)
Main Skipping Isoform:
ENSRNOT00000033749fB13634
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATATCTTCGTGGATACTGGGC
R:
AGGATGGCTGTAGTGGTGGTA
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]