HsaEX6101408 @ hg19
Exon Skipping
Gene
ENSG00000131183 | SLC34A1
Description
solute carrier family 34 (sodium phosphate), member 1 [Source:HGNC Symbol;Acc:11019]
Coordinates
chr5:176821029-176824075:+
Coord C1 exon
chr5:176821029-176821196
Coord A exon
chr5:176823734-176823850
Coord C2 exon
chr5:176823951-176824075
Length
117 bp
Sequences
Splice sites
3' ss Seq
GGGATGCGGTTTCCTTGCAGACT
3' ss Score
7.61
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GCAACCACATCTTTGTGGACACTGGCCTACCGGACCTGGCTGTGGGGCTCATCCTGCTGGCAGGATCCCTGGTGCTGCTGTGCACCTGCCTCATCCTCCTAGTCAAGATGCTCAACTCCCTGCTCAAGGGCCAAGTGGCCAAGGTCATCCAGAAGGTCATCAATACGG
Seq A exon
ACTTCCCTGCCCCCTTCACCTGGGTCACAGGCTACTTTGCCATGGTGGTGGGCGCCAGCATGACCTTCGTGGTCCAGAGCAGTTCTGTGTTCACCTCGGCCATCACCCCACTCATCG
Seq C2 exon
GTCTTGGTGTGATCAGCATTGAGAGGGCCTACCCGCTCACACTGGGTTCCAACATCGGCACCACCACCACGGCCATCCTGGCTGCCCTGGCCAGCCCCAGGGAGAAGCTGTCCAGCGCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131183-'13-15,'13-14,14-15=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(19.1=47.4)
A:
PF0269010=Na_Pi_cotrans=FE(27.7=100)
C2:
PF0269010=Na_Pi_cotrans=FE(29.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTTTGTGGACACTGGCC
R:
CAGGATGGCCGTGGTGGT
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)