BtaEX6039910 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020351 | SLC34A1
Description
Bos taurus solute carrier family 34 (sodium phosphate), member 1 (SLC34A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103223]
Coordinates
chr7:40249195-40250996:+
Coord C1 exon
chr7:40249195-40249264
Coord A exon
chr7:40249521-40249688
Coord C2 exon
chr7:40250880-40250996
Length
168 bp
Sequences
Splice sites
3' ss Seq
ACCACTCCCCAACCCCACAGGCA
3' ss Score
9.01
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTTCCCACTCCTATGCCCAGGGCAGAGGCCAACACCAGCCGGATGCTCAGGAATGCCACCCTGGAGAAAT
Seq A exon
GCAACCACATCTTTGTGGACACGGGGCTGCCTGACCTAGCTGTGGGGCTCATCCTGCTGGCTGGCTCCCTGGCACTCCTGTGCACCTGTCTCATCCTCCTTGTCAAGATGCTCAACTCTCTGCTCAAGGGCCAGGTGGCCAAGGTCATTCAGAAGGTTATCAACACTG
Seq C2 exon
ACTTTCCCACCCCTTTCACCTGGGCCACAGGCTACTTTGCCATGGTGGTAGGGGCCAGCATGACCTTTGTCGTCCAGAGCAGTTCTGTGTTCACCTCAGCCATCACCCCACTCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020351-'14-22,'14-19,17-22=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=0.088 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0269010=Na_Pi_cotrans=PU(19.1=47.4)
C2:
PF0269010=Na_Pi_cotrans=FE(27.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCCACTCCTATGCCCAGG
R:
GATGAGTGGGGTGATGGCTGA
Band lengths:
186-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]