HsaEX0059378 @ hg38
Exon Skipping
Gene
ENSG00000131183 | SLC34A1
Description
solute carrier family 34 member 1 [Source:HGNC Symbol;Acc:HGNC:11019]
Coordinates
chr5:177393694-177396849:+
Coord C1 exon
chr5:177393694-177393763
Coord A exon
chr5:177394028-177394195
Coord C2 exon
chr5:177396733-177396849
Length
168 bp
Sequences
Splice sites
3' ss Seq
AGGAGCTCCACCCCCTGCAGGCA
3' ss Score
4.99
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
Exon sequences
Seq C1 exon
GCTCCCACCTCCATGTCCAGAGCAGAGGCCAACTCCAGCCAGACCCTTGGAAATGCCACCATGGAGAAAT
Seq A exon
GCAACCACATCTTTGTGGACACTGGCCTACCGGACCTGGCTGTGGGGCTCATCCTGCTGGCAGGATCCCTGGTGCTGCTGTGCACCTGCCTCATCCTCCTAGTCAAGATGCTCAACTCCCTGCTCAAGGGCCAAGTGGCCAAGGTCATCCAGAAGGTCATCAATACGG
Seq C2 exon
ACTTCCCTGCCCCCTTCACCTGGGTCACAGGCTACTTTGCCATGGTGGTGGGCGCCAGCATGACCTTCGTGGTCCAGAGCAGTTCTGTGTTCACCTCGGCCATCACCCCACTCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131183_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0269010=Na_Pi_cotrans=PU(19.1=47.4)
C2:
PF0269010=Na_Pi_cotrans=FE(27.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCACCTCCATGTCCAGAG
R:
CGATGAGTGGGGTGATGGC
Band lengths:
186-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development