MmuEX1023963 @ mm10
Exon Skipping
Gene
ENSMUSG00000021490 | Slc34a1
Description
solute carrier family 34 (sodium phosphate), member 1 [Source:MGI Symbol;Acc:MGI:1345284]
Coordinates
chr13:55408692-55412149:+
Coord C1 exon
chr13:55408692-55408755
Coord A exon
chr13:55408993-55409160
Coord C2 exon
chr13:55412033-55412149
Length
168 bp
Sequences
Splice sites
3' ss Seq
TCCTGATACTGCCCTTTCAGGCA
3' ss Score
6.78
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCTTCCACTTCTATGTCCAGGGTAGAGGCCATCGGCAGCCTTGCAAACACCACCATGGAGAAAT
Seq A exon
GCAACCATATCTTCGTGGATACGGGGCTGCCCGACCTGGCCGTGGGGCTCATTCTGCTGGCGGGCTCCCTGGTGGTTCTCTGCACTTGTCTTATCCTCCTTGTGAAGATGCTCAACTCCCTGCTCAAGGGCCAAGTGGCCAATGTCATCCAGAAGGTCATCAACACAG
Seq C2 exon
ACTTTCCTGCCCCCTTCACCTGGGTCACGGGCTACTTTGCCATGGTGGTGGGTGCCAGCATGACCTTTGTTGTCCAGAGCAGCTCCGTGTTCACCTCAGCCATCACCCCACTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021490-'23-39,'23-33,25-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0269010=Na_Pi_cotrans=PU(19.3=47.4)
C2:
PF0269010=Na_Pi_cotrans=FE(27.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCACTTCTATGTCCAGGG
R:
CAATGAGTGGGGTGATGGCTG
Band lengths:
181-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types