DreEX6056655 @ danRer10
Exon Skipping
Gene
ENSDARG00000028824 | slc34a1a
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-101006-3]
Coordinates
chr14:824236-826904:-
Coord C1 exon
chr14:826787-826904
Coord A exon
chr14:824736-824903
Coord C2 exon
chr14:824236-824352
Length
168 bp
Sequences
Splice sites
3' ss Seq
TAGTGTGGTTTTCCGCTCAGGTC
3' ss Score
6.07
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
TCCTCGGTGAATGTGACGCATGCGGCCGTACGAAACTGCACTGGACTGCACTGTGGGAGGGATGGAGACCTGACCTGGATCACTCAGAATATCACCACACACATCAACACGGAGAAAT
Seq A exon
GTCGTCATGTGTTCGTGGATACAGGGCTGTCAGATCTGGCTGTGGGACTCATTCTGCTGGCCGGATCTCTGATGCTGCTGTGCTCCTGCCTGCTGTTCATCGTTAAAGTGCTCAACTCACTTCTCAAAGGTCAAGTGGCCAAGGTCATCGAAGGGGTCATCAACACAG
Seq C2 exon
ATTTCCCGTATCCTCTAGGATGGCTGTCTGGATATCTGGCGATGCTGATGGGAGCAGGAATGACCTTCATCATCCAGAGCAGCTCCGTCTTCACCTCCGCCCTCACTCCACTCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028824-'12-10,'12-9,15-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0269010=Na_Pi_cotrans=PU(19.6=47.4)
C2:
PF0269010=Na_Pi_cotrans=FE(26.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCGGTGAATGTGACGCAT
R:
GATGAGTGGAGTGAGGGCGG
Band lengths:
234-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]